AttributeReportTable of Contents

AttributeReportOutputAttributeReportDisplay the attribute report for the current version of NMPDR. Fo each attribute in the named group, the description of the attribute wil be displayed along with a sampling of the attribute values. If th attribute is in one of the entity type groups (Feature, Genome Role, etc.), a report will be generated indicating how many distinc NMPDR entity instances have values for the attribute. So, if the attribut is in the Genome group, a report will be generated indicating how many distinc NMPDR genomes have values for the attribute. The output will be in HTML format.

The positional parameters should be the names of the groups for whic reports are desired.

The currently-supported command-line options are as follows.

userName suffix to be used for log files. If omitted, the PID is used.

traceNumeric trace level. A higher trace level causes more messages to appear. Th default trace level is 2. Tracing will be to the traceUser.logUser is the value of the usersqlIf specified, turns on tracing of SQL activity.

backgroundSave the standard and error output to files. The files will be create in the FIG temporary directory and will be named errUser.log an outUser.log, respectively, where User is the value of th user option above.

hDisplay this command's parameters and options.

phonePhone number to message when the script is complete.

noCoverIf specified, suppresses the coverage report output, which greatl improves the speed.

sampleNumber of sample attribute values to display. The default is 50.

outputOutput file in which the web page will be built.

OutputOutput($fh, $data);

Output the specified HTML data line using the specified output handle. All thi method really does is a print statement with a new-line code on the end.

fhOpen output file handle.

dataData line to write out.