FIGVTable of Contents

dna_seqtaxa_to_seed_idsSearch Databasemodel_directorydna_sequsage: $seq = dna_seq($genome,@locations)

Returns the concatenated subsequences described by the list of locations. Each locatio must be of the form

where Contig must be the ID of a contig for genome $genome. If Beg > End the locatio describes a stretch of the complementary strand.

taxa_to_seed_idsGiven a prefix of a taxonomy string, return the list of metagenome fids tha mapped to SEED organisms in that taxonomy.

Search DatabaseSearches the database for objects that match the query string in some way.

Returns a list of results if the query is ambiguous or an unique identifie otherwise.

model_directoryFIG->model_directory($organism);

Returns the model directory of an organism.

$organismThe seed-taxonomy id of the organism, e.g. 83333.1. If you pass th string 'All', you will get the directory for the global model.