GenomeStatsTable of Contents

Genome Data GeneratorGenome Data GeneratorThis script creates a set of HTML include files that list the statistics fo the genomes in each of the genome groups. Genomes that are new to this versio of the Sprout will be specially marked. In order for this to work, both th current and previous Sprout databases must be available on this machine.

The currently-supported command-line options are as follows.

userName suffix to be used for log files. If omitted, the PID is used.

traceNumeric trace level. A higher trace level causes more messages to appear. Th default trace level is 2. Tracing will be directly to the standard outpu as well as to a traceUser.log file in the FIG temporary directory where User is the value of the user option above.

sqlIf specified, turns on tracing of SQL activity.

backgroundSave the standard and error output to files. The files will be create in the FIG temporary directory and will be named errUser.log an outUser.log, respectively, where User is the value of th user option above.

hDisplay this command's parameters and options.

strictIf specified, strict groups will be used; otherwise, groups with a common primary nam will be combined into a single group. (The primary name of the group is the firs capitalized word.)

oddStyleStyle to use for odd rows of the table.

evenStyleStyle to use for even rows of the table.

tableStyleStyle to use for the table itself.

markerStyleStyle to use for small-text markers (e.g. NEW!)

numStyleStyle to use for numeric cells.

counterStyleStyle to use for counter cells.

linkCGIPath to the CGI script for displaying detailed statistics.

noNewCheckIf specified, the check for new genomes in the group is suppressed. Thi may need to be done if there's been a change in the database definition. Not that all this really does is keep the NEW! symbol from showing. It doe not affect which genomes show up in the table.